Members & collabs

/Members & collabs
Members & collabs2021-08-24T07:25:11+00:00
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Team Activities
José Tomás Matus Picero Tomsbiolab

José Tomás Matus (PI)

Born in Santiago de Chile in 1979. Studied Biological Sciences at the P. Universidad Católica de Chile (PUC, 2003), where he also obtained his PhD (2008; Agricultural Sciences) in the field of plant nutrition and physiology, studying the genetic regulation of flavonoid synthesis in grapevine. Postdoctoral training in the laboratory of Dr. José Luis Riechmann, at the Center for Research in Agricultural Genomics (CRAG), studying reproductive organ development in Arabidopsis through the analysis of correlated transcription factor genome-wide binding (ChIP-Seq), transcriptomic and proteomic data, while continuing studies on transcription factors controlling secondary metabolism in grape. In 2010, was awarded a EMBO long term-postdoctoral fellowship. Tom has been awarded with the Ramon y Cajal program and since 2019 is Principal Investigator at the I2SysBio, in Valencia, where he started the ‘Transcriptional Orchestration of Metabolism’ Group at UV. He is also devoted to wine tastings. Twitter account @jtmatus

Present substitute member of the Management Committee COST ACTION CA17111.

RESEARCHER ID G-3195-2016
Profile at Research Gate
Reviewer profile at Publons
ORCID 0000-0002-9196-1813

Pablo Romero Tomsbiolab

Pablo Romero, MSc (Lab Technician)

Pablo graduated from Biotechnology Engineering at University of Santiago de Chile (USACH) in 2015 and conducted his Master’s Degree in Plant Cellular and Molecular Biotechnology at IBMCP (Valencia) in 2017-2018. Pablo spears some time also working as a translator of patents and technology transfer documents and has been involved in dissemination activities towards the correct use of medicinal Cannabis. Follow his twitter account @Mazterdog

David Navarro, PhD (Postdoc)

David is from Valencia. He studied Molecular Biology at Cardiff University and also did his PhD in the same University. David is interested in Transcription factor gene family identifications and comparisons between different grape genome accessions. He is currently performing ‘pathway-centered’ gene co-expression networks too. He is also in the Bioinformatic’s Master’s degree at University of Valencia.
Chen Zhang Tomsbiolab

Chen Zhang, MSc (PhD student, CSC Scholar)

Chen comes from Shaanxi, China. She studied Horticultural Science and did her MSc degree in Pomology at the Northwest A&F University. Follow her twitter account @ChenZhang5859
Luis Orduña Tomsbiolab

Luis Orduña, MSc (PhD student, FPI Scholar)

Luis studied Biotechnology at University of Valencia and did his M.Sc. in Bioinformatics in the same University. His interests in the lab are related to determining  gene regulatory networks of transcription factors. Luis is a real sport’s fan, and practices football, basketball, sky and tennis! Follow his twitter account @luis_orduna96

Arnau Peris  (MSc degree student)

Arnau is originally from Alcoy (Alicante) but graduated in Biotechnology at Universidad Rovira i Virgili (Tarragona, Spain). He is conducting his Master’s degree in Bioinformatics at UniBo (University of Bologna, Italy). His interests in the lab concern gene network, RNA-seq and phylogenetic analyses. On his free time, Arnau practices sport climbing.
Antonio Santiago Tomsbiolab

Antonio Santiago  (MSc degree student)

Antonio is from Badajoz. He is now a second year student in the M.Sc. degree in Bioinformatics (UV).
Alberto Perez Tejeda Tomsbiolab

Alberto Pérez Tejeda  (MSc degree student)

Alberto is from Villanueva de la Serena, Badajoz. He studied Biotechnology in the University of Valencia (UV), and conducted a Master’s degree in Research and Development in Biotechnology & Biomedicine (UV). He is currently doing his second Master’s Program in Bioinformatics at UV. Alberto has joined TOMSBio lab this year, interested in cannabinoid and terpenoid regulation.

Jone Etxeberria (MSc degree student)

Jone studied Marine Sciences and Biotechnology at the Catholic University of Valencia and is conducting her M.Sc. in Research and Development in Biotechnology and Biomedicine at the University of Valencia. Her interests in the lab are related to the production of secondary metabolites in Artemisia annua such as artemisinin and other metabolites. Jone has a lot of different interests such as football, diving, roller-blading and horse riding.

Invited Students

Miguel Santo Domingo

Short Stay April 2021-
PhD Student at Jordi García Mas Lab, at the Institute of Agrifood Research and Technology (IRTA, CRAG). Miguel is learning DAP-seq in our lab to characterise ripening-controlling factors in melon.

Gabriele Magon

Long Stay June- December 2021-
PhD Student in DAFNAE – Dipartimento di Agronomia, Animali, Alimenti, Risorse naturali e Ambiente at the University of Padova, Italy (under the supervision of Alessandro Vannozzi). In our lab, Gabriele is performing DAP-seq and heterologous over-expression in tomato and Arabidopsis to characterise grapevine TFs.

Past Members

Angel Díaz

Ángel is from Tenerife (Canary Islands). He studied Biotechnology in the University of Valencia, where he joined TOMSBio lab as an undergraduate student. He is now in the MSc Degree in Plant Genetic Improvement (Master Interuniversitario en Mejora Genética Vegetal) from UPV – Instituto Universitario de Conservación y Mejora de la Agrodiversidad Valenciana (COMAV). Follow his twitter account @Adg340

Aleksandra Leska

Erasmus exchange Program, MSc degree in the International Faculty of Engineering and Biotechnology (Lodz University, Poland).

Arnau Cerqueda

 MSc in Plant Biology, Genomics and Biotechnology, Universitat Autònoma de Barcelona (UAB).

Javiera Manterola

Visitant. Biotechnology (University of Santiago de Chile, USACH)

It is the long history of humankind (and animal kind, too) that those who learned to collaborate and improvise most effectively have prevailed.”  

Charles Darwin

Collaborators

Following the viewpoint that “It takes two flints to make a fire” (Louisa May Alcott), we have established fruitful international collaborations resulting in several published peer-review publications:

Dr. Dario Cantu (University of California, Davis USA) –>website

Dr. Shao-shan Carol Huang (New York University, USA) –>website

Dr. Manuel Rodriguez-Concepción (Center for Research in Agricultural Genomics, Spain) 

Dr. Sara Zenoni / Dr. Giovanni Battista Tornielli (University of Verona, Italy)

Dr. Jochen Bogs (COS Heidelberg – Universität Heidelberg, Germany)

Dr. Simone Castellarin (University of British Columbia, Canada) –>website

Dr. Patricio Arce-Johnson (P. Universidad Católica de Chile, Chile)

Dr. Eric Duchene (INRA Colmar, France)

Dr. Serge Delrot and Francois Barrieu (Institut des Sciences de la Vigne et du Vin, Bordeaux, France)

P  A  S  T     C  O  L  L  A  B  O  R  A  T  I  O  N  S

Dr. Haiping Xin (Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan, China)

Dr. Agnès Ageorges (SupAgro, INRA Montpellier, France)

Dr. Christopher Rock (Texas Tech University, United States)

Dr. Chiara Tonelli and Dr. Massimo Galbiati (University of Milan, Italy)

With the commitment of consenting the efficient exploitation of Vitis biological resources and understanding the genetic and molecular basis of all processes in this species, the International Grapevine Genome Program (IGGP) is currently developing the GrapeIS system. This is an integrated set of interfaces supporting advanced data modeling, rich semantic integration and the next generation of data mining tools linking genotypes to phenotypes (Adam-Blondon et al. 2016). Within the same framework, the recently launched INTEGRAPE consortium (COST Action-mediated) aims to integrate data at different levels to maximize the power of omics and establish a manageable and open data platform. The initiatives mentioned here share the use of FAIR principles that ensure data are Findable, Accessible, Interoperable and Reusable (Wilkinson et al. 2016). Our team forms part of this collaborative project.

For more information on INTEGRAPE click here.