Latest Publications

(* full or shared corresponding authorship)

  • Chiara Foresti, Luis Orduña, José Tomás Matus, Elodie Vandelle, Davide Danzi, Oscar Bellon, Giovanni Tornielli, Alessandra Amato, and Sara Zenoni.
    NAC61
    regulates late- and post-ripening osmotic, oxidative, and biotic stress responses in grapevine. Journal of Experimental Botany. In press.
  • Felipe Pérez de los Cobos, Beatriz E. García-Gómez, Luis Orduña-Rubio, Ignasi Batlle, Pere Arús, José Tomás Matus, Iban Eduardo. Exploring large-scale gene coexpression networks in peach (Prunus persica L.): A new tool for predicting gene function. Horticulture Research. In press.
  • Chen Zhang, Zhanwu Dai, Thilia Ferrier, Luis Orduña, Antonio Santiago, Arnau Peris, Darren C J Wong, Christian Kappel, Stefania Savoi, Rodrigo Loyola, Alessandra Amato, Bartosz Kozak, Miaomiao Li, Akun Liang, David Carrasco, Carlos Meyer-Regueiro, Carmen Espinoza, Ghislaine Hilbert, Rosa Figueroa-Balderas, Dario Cantu, Rosa Arroyo-Garcia, Patricio Arce-Johnson, Patricia Claudel, Daniel Errandonea, Manuel Rodríguez-Concepción, Eric Duchêne, Shao-shan Carol Huang, Simone Diego Castellarin, Giovanni Battista Tornielli, Francois Barrieu, José Tomás Matus, MYB24 orchestrates terpene and flavonol metabolism as light responses to anthocyanin depletion in variegated grape berriesThe Plant Cell, Volume 35, Issue 12, December 2023, Pages 4238–4265, https://doi.org/10.1093/plcell/koad228
  • Luis Orduña, Antonio Santiago, David Navarro-Payá, Chen Zhang, Darren C J Wong, José Tomás Matus, Aggregated gene co-expression networks predict transcription factor regulatory landscapes in grapevine, Journal of Experimental Botany, Volume 74, Issue 21, 21 November 2023, Pages 6522–6540, https://doi.org/10.1093/jxb/erad344
  • Sara Rosa-Téllez, Andrea Alcántara-Enguídanos, Federico Martínez-Seidel, Ruben Casatejada-Anchel, Sompop Saeheng, Clayton L Bailes, Alexander Erban, David Barbosa-Medeiros, Paula Alepúz, José Tomás Matus, Joachim Kopka, Jesús Muñoz-Bertomeu, Stephan Krueger, Sanja Roje, Alisdair R Fernie, Roc Ros, The serine–glycine–one-carbon metabolic network orchestrates changes in nitrogen and sulfur metabolism and shapes plant development, The Plant Cell, 2023;, koad256, https://doi.org/10.1093/plcell/koad256
  • Álvarez-Urdiola R, Borràs E, Valverde F, Matus JT, Sabidó E, Riechmann JL. Peptidomics Methods Applied to the Study of Flower Development. Methods Mol Biol. 2023;2686:509-536. doi: 10.1007/978-1-0716-3299-4_24.
  • Álvarez-Urdiola R, Matus JT, Riechmann JL. Multi-Omics Methods Applied to Flower Development. Methods Mol Biol. 2023;2686:495-508. doi: 10.1007/978-1-0716-3299-4_23.
  • Luis OrduñaAntonio SantiagoDavid Navarro-Paya, Chen Zhang, Darren C.J. WongJose Tomas Matus. Aggregated gene co-expression networks for predicting transcription factor regulatory landscapes in a non-model plant species
  • Xiaoya Shi, Shuo Cao, Xu Wang, Siyang Huang, Yue Wang, Zhongjie Liu, Wenwen Liu, Xiangpeng Leng, Yanling Peng, Nan Wang, Yiwen Wang, Zhiyao Ma, Xiaodong Xu, Fan Zhang, Hui Xue, Haixia Zhong, Yi Wang, Kekun Zhang, Amandine Velt, Komlan Avia, Daniela Holtgräwe, Jérôme Grimplet, José Tomás Matus, Doreen Ware, Xinyu Wu, Haibo Wang, Chonghuai Liu, Yuling Fang, Camille Rustenholz, Zongming Cheng, Hua Xiao, Yongfeng Zhou, The complete reference genome for grapevine (Vitis vinifera L.) genetics and breeding, Horticulture Research, 2023;, uhad061, https://doi.org/10.1093/hr/uhad061
  • Amandine Velt, Bianca Frommer, Sophie Blanc, Daniela Holtgräwe, Éric Duchêne, Vincent Dumas, Jérôme Grimplet, Philippe Hugueney, Catherine Kim, Marie Lahaye, José Tomás Matus, David Navarro-Payá, Luis Orduña, Marcela K Tello-Ruiz, Nicola Vitulo, Doreen Ware, Camille Rustenholz, An improved reference of the grapevine genome reasserts the origin of the PN40024 highly-homozygous genotype, G3 Genes|Genomes|Genetics, 2023;, jkad067, https://doi.org/10.1093/g3journal/jkad067

Czemmel S, Höll J, Loyola R, Arce-Johnson P, Alcalde JA, Matus JT, Bogs J. Transcriptome-Wide Identification of Novel UV-B- and Light Modulated Flavonol Pathway Genes Controlled by VviMYBF1. Front Plant Sci. 2017 Jun 22;8:1084. doi: 10.3389/fpls.2017.01084. eCollection 2017. PubMed PMID: 28690624; PubMed Central
PMCID: PMC5479930.

Wong DCJ, Matus JT*. Constructing Integrated Networks for Identifying New Secondary Metabolic Pathway Regulators in Grapevine: Recent Applications and Future Opportunities. Front Plant Sci. 2017 Apr 12;8:505. doi: 10.3389/fpls.2017.00505. eCollection 2017. PubMed PMID: 28446914; PubMed Central PMCID: PMC5388765.

Matus JT, Cavallini E, Loyola R, Höll J, Finezzo L, Dal Santo S, Vialet S, Commisso M, Roman F, Schubert A, Alcalde JA, Bogs J, Ageorges A, Tornielli GB, Arce-Johnson P. A group of grapevine MYBA transcription factors located in chromosome 14 control anthocyanin synthesis in vegetative organs with different specificities compared with the berry color locus. Plant J. 2017 Jul;91(2):220-236. doi: 10.1111/tpj.13558. Epub 2017 May 17. PubMed PMID: 28370629.

  • XIII International Symposium on Grapevine Breeding and Genetics, Landau (2022). Matus. Gene functional characterization assisted by genome-wide TF-binding site interrogation: watch presentation here
  • XI International Symposium on Grapevine Physiology and Biotechnology (2021). Navarro-Payá; Orduña; Zhang; Santiago; Li; Huang; Matus. «Genome-wide exploration of transcription factor targets involved in grape specialized metabolism and visualization through DAPBrowse: a centralized genome-browser for DAP-seq data».  Oral presentation.
  • XI International Symposium on Grapevine Physiology and Biotechnology (2021). Pilati; Navarro-Payá; Malacarne; Tomé; Riscica; Cavecchia; Matus; Moser; Blanzieri. «Vitis OneGenE: a causality-based method for gene network analysis in grapevine. Characterization of the laccase and dirigent protein gene families». Oral presentation.
  • Reunión de Biología Molecular de Plantas (Online, 26-27 November 2020). Luis Orduña, Chen Zhang, Miaomiao Li, Dario Cantu, Carol Huang, José Tomás Matus. DAP-Seq used to unveil MYB cistrome landscapes specifically associated to the regulation of secundary metabolism in grape. Oral presentation.
  • Reunión de Biología Molecular de Plantas (Online, 26-27 November 2020). Chen Zhang, Luis Orduña, Miaomiao Li, Alessandra Amato, Giovanni Battista Tornielli, Dario Cantu, Shao-shan Carol Huang, José Tomás Matus. Genome-wide binding of VviMYB24 in the grapevine terpene synthase family. Poster.
  • Symposium on Small Molecules in Plant Research (Valencia, Spain, 10-11 December 2019). Pablo Romero, Arnau Peris, Arnau Cerqueda, Chen Zhang, Zhanwu Dai, Miguel Simon, Victoria Barja, Erich Duchene, Carol Huang, Manuel Rodríguez Concepción, François Barrieu, José Tomás Matus. Deciphering the Interaction of Distinct Secondary Metabolic Pathways: Transcriptional Effects of Anthocyanin Depletion/Emergence on Isoprenoid Metabolism. Poster.
  • Carlisle Bascom, MYB sommeliers: MYB24 drives UV response on the light side of variegated grapeThe Plant Cell, Volume 35, Issue 12, December 2023, Pages 4193–4194, https://doi.org/10.1093/plcell/koad234