Grape R2R3-MYB Family
The following trees show very similar topologies and clustering of functional subgroups described by Kelemen et al., 2015.
1. Phylogenetic relationships between Vitis and Arabidopsis R2R3-MYB families. (constructed by JTM in Wong et al., 2016).
Grapevine accessions shown with asterisks correspond to RNA-Seq-confirmed or improved sequences. Proteins isolated from other cultivars are shown with letters (CS: Cabernet Sauvignon, SH: Syrah). Annotations without RNA-Seq confirmation were taken from the Pinot Noir reference genome (PN). AtmaMYB was used as outgroup (AT5G45420). Red lines represent subgroups that were further defined based on the presence of C-terminal motifs identified in MEME and/or described by Stracke et al. (2001). Bootstrap values (>75) are shown on a coloured scale ranging from purple to blue. Click on thumbnail to access the high-resolution image. You can also access the PDF version (no subgroup numbering) for manually inspecting IDs, click here.
2. Bayesian Tree for Maximum Likelihood Vitis-Arabidopsis using AQUILO (UniProtKB – D7T987) as outgroup (constructed by Alberto Perez-Tejeda, Master’s degree student in Bioinformatics).
Grapevine accessions show the cultivars in which these sequences were taken (PN: Pinot Noir, CV: Corvina, ML: Merlot) and the A. thaliana were taken from The Arabidopsis Informati
Cannabis R2R3-MYB Family